![stereology software stereology software](https://media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs13000-017-0653-0/MediaObjects/13000_2017_653_Fig6_HTML.gif)
- #Stereology software movie
- #Stereology software software
- #Stereology software Offline
- #Stereology software series
![stereology software stereology software](https://embed-ssl.wistia.com/deliveries/931ded80b3835cb5e7161966ff587e12.jpg)
Multicolor_em: NCMIR developed ImageJ plug-in for overlaying correlated, color-coded nanoSIMS/EELS chemical maps atop conventional EM images. IMOD Utilities: NCMIR developed plugins for IMOD for manually tracing contours, performing stereology, and facilitating volumetric data analysis. Segmentation Utilities: Post-processing tools for masking segmented features, manipulating IMOD model files, and performing organelle specific morphometric analysis.
![stereology software stereology software](https://www.mdpi.com/electronics/electronics-10-01432/article_deploy/html/images/electronics-10-01432-g001.png)
Probability Map Viewer: A web application for viewing probability map generation in near real time on tiled image data.
#Stereology software series
Supports reconstruction from various schemes of data acquisition, notably multiple tilt series of the same region of interest, acquired at different clocked orientations about the optical axis.Ĭascaded Hierarchical Model (CHM): Provides a scalable solution for the automatic segmentation of images, including natural scene processing and cellular structures in electron microscopy data.ĬDeep3M: A plug-and-play, cloud-based deep learning solution for the automatic segmentation of light, electron and X-ray microscopy data sets. Accommodates effects of curvilinear electron trajectories, sample warping, point spread functions (PSF), errors in alignment, noise, and the missing cone of projections.
#Stereology software software
Results can be exported directly into Microsoft Excel.Transform-based Tracking, Bundle Adjustment and Reconstruction (TxBR): Software for 3D image acquisition and reconstruction of electron microscopic tomography (EMT) datasets. With 13 stereological probes, it will efficiently allow you to obtain precise and unbiased estimates of cell number (Optical Fractionator probe), volume fractions (Cavalieri Estimator probe), or spatial distribution (Nearest Neighbor probe) of tissue components.
![stereology software stereology software](https://minio.scielo.br/documentstore/1678-2690/pMP4Fksq5jcYLMGYHqwfrdv/329d8d701760f65470cc8c0f4c8b86492d63decb.gif)
StereoInvestigator ( MBF Bioscience, Williston, VT) image analysis software is designed to count cells, quantify lengths, area, and volumes in biological samples while employing stereological principles. Co-localization analysis can also be performed for two fluorophores in 3D. The Volocity Classification module will identify, measure and track biological structures in 2D, 3D, and 4D.
#Stereology software movie
Animated movie volumes can be created with the Movie Sequencer module. The viewing point can be placed either inside or outside of the 3D object, and changes of structures over time monitored. The Volocity 3D view enables the user to interactively explore a 3D rendered object. The Volocity Visualization module provides an extensive array of visualization and publication features. The software can be used for 2D, 3D, and 4D imaging, and will accept image sequences from both confocal and wide-field microscopes. Volocity ( PerkinElmer, Waltham, MA) is a high-performance 3D imaging software package providing visualization, exploration and analysis capabilities of multi-channel 3D volumes over time. PerkinElmer Volocity 3D Rendering Software All measurements are logged onto an Excel spreadsheet for subsequent analysis of data.
#Stereology software Offline
MetaMorph Offline software (Universal Imaging Corporation, a subsidiary of Molecular Devices) is a high end software package used extensively for image analysis, including colocalization, measurements of areas and distances and object counting and cell tracking with interactive user created regions of interest or automated analysis using an intensity threshold. The MetaMorph software is on a dedicated computer using a 20 inch flat screen monitor with associated color printer.